Appendix D — Time calculation

Here we showed the calculation time of each process in methylR for both full and lite versions.

module	processes	calculation time (mm:ss)
methylysis	local run - ChAMP
	(params: BMIQ, batch correction, cores = 4)	03:11 s
	server run - ChAMP
	(params: BMIQ, batch correction, cores = 2)	03:10 s*
	local run - minfi
	(params: raw, filters, cores = 4)	04:01 s
	server run - minfi
	(params: raw, filters, cores = 2)	03:40 s
multi-D		00:2 s
gene features		00:02 s
heatmap		00:01 s
volcano		00:18 s
chromosome		00:04 s
gene ontology		01:30 s
pathway analysis		00:18 s